============================= test session starts ============================== platform linux -- Python 3.7.2, pytest-3.6.2, py-1.7.0, pluggy-0.6.0 rootdir: /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/EupsBuildDir/Linux64/meas_algorithms-17.0.1/meas_algorithms-17.0.1, inifile: setup.cfg plugins: flake8-1.0.4, xdist-1.20.1, forked-0.2, session2file-0.1.9, cov-2.5.1, remotedata-0.3.1, openfiles-0.3.2, doctestplus-0.3.0, arraydiff-0.3 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I gw0 [282] / gw1 [282] / gw2 [282] / gw3 [282] / gw4 [282] / gw5 [282] / gw6 [282] / gw7 [282] / gw8 [282] / gw9 [282] / gw10 [282] / gw11 [282] scheduling tests via LoadScheduling ........................................................................................................E....E..EE....E...E..s....E.........E........ss..s..s...E.......EE..E....E.s...................................................................................................... ==================================== ERRORS ==================================== ________________ ERROR at setup of HtmIndexTestCase.testIngest _________________ [gw6] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ---------------------------- Captured stderr setup ----------------------------- RuntimeError: FATAL: module compiled as little endian, but detected different endianness at runtime ______ ERROR at setup of HtmIndexTestCase.testLoadIndexedReferenceConfig _______ [gw6] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ______________ ERROR at setup of HtmIndexTestCase.testValidatePm _______________ [gw2] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ---------------------------- Captured stderr setup ----------------------------- RuntimeError: FATAL: module compiled as little endian, but detected different endianness at runtime _____________ ERROR at setup of HtmIndexTestCase.testLoadPixelBox ______________ [gw6] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ___________ ERROR at setup of HtmIndexTestCase.testValidateRaDecErr ____________ [gw2] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError _____________ ERROR at setup of HtmIndexTestCase.testLoadSkyCircle _____________ [gw6] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ___________ ERROR at setup of HtmIndexTestCase.testValidateRaDecMag ____________ [gw2] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError _____________ ERROR at setup of HtmIndexTestCase.testProperMotion ______________ [gw4] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ---------------------------- Captured stderr setup ----------------------------- RuntimeError: FATAL: module compiled as little endian, but detected different endianness at runtime ________________ ERROR at setup of HtmIndexTestCase.testSanity _________________ [gw4] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ____________ ERROR at setup of HtmIndexTestCase.testValidateMagErr _____________ [gw4] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ___________ ERROR at setup of HtmIndexTestCase.testValidateParallax ____________ [gw4] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ___________ ERROR at setup of HtmIndexTestCase.testAgainstPersisted ____________ [gw0] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError ---------------------------- Captured stderr setup ----------------------------- RuntimeError: FATAL: module compiled as little endian, but detected different endianness at runtime _______ ERROR at setup of HtmIndexTestCase.testDefaultFilterAndFilterMap _______ [gw0] linux -- Python 3.7.2 /usr/local/src/lsst_stack/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/bin/python3.7 cls = @classmethod def setUpClass(cls): cls.outPath = tempfile.mkdtemp() cls.testCatPath = os.path.join(os.path.dirname(os.path.realpath(__file__)), "data", "testHtmIndex.fits") # arbitrary, but reasonable, amount of proper motion (angle/year) # and direction of proper motion cls.properMotionAmt = 3.0*lsst.geom.arcseconds cls.properMotionDir = 45*lsst.geom.degrees cls.properMotionErr = 1e-3*lsst.geom.arcseconds cls.epoch = astropy.time.Time(58206.861330339219, scale="tai", format="mjd") ret = cls.make_skyCatalog(cls.outPath) cls.skyCatalogFile, cls.skyCatalogFileDelim, cls.skyCatalog = ret cls.testRas = [210., 14.5, 93., 180., 286., 0.] cls.testDecs = [-90., -51., -30.1, 0., 27.3, 62., 90.] cls.searchRadius = 3. * lsst.geom.degrees cls.compCats = {} # dict of center coord: list of IDs of stars within cls.searchRadius of center cls.depth = 4 # gives a mean area of 20 deg^2 per pixel, roughly matching a 3 deg search radius config = IndexerRegistry['HTM'].ConfigClass() # Match on disk comparison file config.depth = cls.depth > cls.indexer = IndexerRegistry['HTM'](config) tests/test_htmIndex.py:135: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ python/lsst/meas/algorithms/indexerRegistry.py:46: in makeHtmIndexer return HtmIndexer(depth=config.depth) python/lsst/meas/algorithms/htmIndexer.py:36: in __init__ self.htm = esutil.htm.HTM(depth) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = , depth = 4 def __init__(self, depth=10): > this = _htmc.new_HTMC(depth) E SystemError: returned a result with an error set ../../../../Linux64/esutil/0.6.2.5.lsst2+1/lib/python/esutil/htm/htmc.py:152: SystemError generated xml file: /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/EupsBuildDir/Linux64/meas_algorithms-17.0.1/meas_algorithms-17.0.1/tests/.tests/pytest-meas_algorithms.xml ----------- coverage: platform linux, python 3.7.2-final-0 ----------- Name Stmts Miss Branch BrPart Cover ----------------------------------------------------------------------------------------------------- python/lsst/__init__.py 3 0 0 0 100% python/lsst/meas/__init__.py 3 0 0 0 100% python/lsst/meas/algorithms/__init__.py 41 0 0 0 100% python/lsst/meas/algorithms/astrometrySourceSelector.py 57 1 10 0 96% python/lsst/meas/algorithms/coaddPsf/__init__.py 2 0 0 0 100% python/lsst/meas/algorithms/coaddPsf/coaddPsfContinued.py 4 0 0 0 100% python/lsst/meas/algorithms/defects.py 23 18 8 0 16% python/lsst/meas/algorithms/detection.py 283 39 106 16 82% python/lsst/meas/algorithms/dynamicDetection.py 111 3 20 6 93% python/lsst/meas/algorithms/findCosmicRaysConfig.py 17 0 0 0 100% python/lsst/meas/algorithms/flaggedSourceSelector.py 15 0 2 0 100% python/lsst/meas/algorithms/gaussianPsfFactory.py 43 1 12 1 96% python/lsst/meas/algorithms/htmIndexer.py 15 8 4 0 37% python/lsst/meas/algorithms/indexerRegistry.py 10 0 0 0 100% python/lsst/meas/algorithms/ingestIndexReferenceTask.py 175 111 52 0 28% python/lsst/meas/algorithms/installGaussianPsf.py 27 1 6 2 91% python/lsst/meas/algorithms/loadIndexedReferenceObjects.py 58 41 20 0 22% python/lsst/meas/algorithms/loadReferenceObjects.py 349 225 130 3 34% python/lsst/meas/algorithms/makeCoaddApCorrMap.py 21 1 10 1 94% python/lsst/meas/algorithms/makePsfCandidates.py 45 1 10 1 96% python/lsst/meas/algorithms/matcherSourceSelector.py 48 6 6 0 89% python/lsst/meas/algorithms/measureApCorr.py 113 20 36 4 81% python/lsst/meas/algorithms/objectSizeStarSelector.py 244 90 102 8 61% python/lsst/meas/algorithms/pcaPsfDeterminer.py 326 127 177 23 57% python/lsst/meas/algorithms/psfCandidate/__init__.py 2 0 0 0 100% python/lsst/meas/algorithms/psfCandidate/psfCandidateContinued.py 7 1 2 0 89% python/lsst/meas/algorithms/psfDeterminer.py 18 1 0 0 94% python/lsst/meas/algorithms/readFitsCatalogTask.py 25 0 10 0 100% python/lsst/meas/algorithms/readTextCatalogTask.py 24 0 6 0 100% python/lsst/meas/algorithms/reserveSourcesTask.py 44 0 10 0 100% python/lsst/meas/algorithms/skyObjects.py 48 2 12 4 90% python/lsst/meas/algorithms/sourceSelector.py 168 4 46 7 95% python/lsst/meas/algorithms/starSelector.py 25 9 4 0 55% python/lsst/meas/algorithms/subtractBackground.py 108 31 42 12 63% python/lsst/meas/algorithms/testUtils.py 47 0 8 1 98% python/lsst/meas/algorithms/utils.py 525 498 188 0 4% python/lsst/meas/algorithms/version.py 6 0 0 0 100% tests/test_astrometrySourceSelector.py 95 2 14 1 97% tests/test_coaddApCorrMap.py 93 2 12 1 97% tests/test_coaddBoundedField.py 135 2 14 1 98% tests/test_coaddPsf.py 330 3 34 2 99% tests/test_coaddTransmissionCurve.py 110 2 10 1 98% tests/test_cr.py 105 58 22 1 38% tests/test_detection.py 84 2 8 1 97% tests/test_dynamicDetection.py 62 3 4 1 94% tests/test_executables.py 8 1 2 1 80% tests/test_flaggedSourceSelector.py 44 2 6 1 94% tests/test_gaussianPsf.py 147 12 28 3 90% tests/test_gaussianPsfFactory.py 105 5 56 5 94% tests/test_htmIndex.py 329 236 74 1 24% tests/test_installGaussianPsf.py 64 2 12 1 96% tests/test_interp.py 124 94 22 1 21% tests/test_loadReferenceObjects.py 96 3 24 1 97% tests/test_matcherSourceSelector.py 65 2 8 1 96% tests/test_measure.py 235 91 40 4 59% tests/test_measureApCorr.py 137 2 4 1 98% tests/test_negative.py 82 7 18 5 88% tests/test_objectSizeStarSelector.py 96 2 22 1 97% tests/test_psfCandidate.py 112 9 30 4 88% tests/test_psfDetermination.py 266 19 50 10 91% tests/test_psfIO.py 231 64 42 6 67% tests/test_psfSelectTest.py 273 25 54 13 87% tests/test_readFitsCatalog.py 78 5 12 2 92% tests/test_readTextCatalog.py 60 10 12 2 78% tests/test_reserveSourcesTask.py 68 3 22 1 96% tests/test_sdssShapePsf.py 103 3 14 3 95% tests/test_sourceSelector.py 243 3 17 1 98% tests/test_ticket-2986.py 37 2 2 1 92% ----------------------------------------------------------------------------------------------------- TOTAL 7097 1915 1728 167 69% Coverage HTML written to dir tests/.tests/pytest-meas_algorithms.xml-htmlcov Coverage XML written to file tests/.tests/pytest-meas_algorithms.xml-cov-meas_algorithms.xml =============================== warnings summary =============================== tests/test_measure.py::GaussianPsfTestCase::testPsfFlux /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_negative.py::NegativeMeasurementTestCase::testBasics /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_measure.py::MeasureTestCase::testFootprintsMeasure /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfIO.py::SpatialModelPsfTestCase::testCandidateList /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfIO.py::SpatialModelPsfTestCase::testGetPcaKernel /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_readTextCatalog.py::ReadTextCatalogTaskTestCase::testGivenNames /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/EupsBuildDir/Linux64/meas_algorithms-17.0.1/meas_algorithms-17.0.1/python/lsst/meas/algorithms/readTextCatalogTask.py:117: VisibleDeprecationWarning: Reading unicode strings without specifying the encoding argument is deprecated. Set the encoding, use None for the system default. names=names) tests/test_readTextCatalog.py::ReadTextCatalogTaskTestCase::testTooFewColumnNames /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/EupsBuildDir/Linux64/meas_algorithms-17.0.1/meas_algorithms-17.0.1/python/lsst/meas/algorithms/readTextCatalogTask.py:117: VisibleDeprecationWarning: Reading unicode strings without specifying the encoding argument is deprecated. Set the encoding, use None for the system default. names=names) tests/test_readTextCatalog.py::ReadTextCatalogTaskTestCase::testDefaultNames /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/EupsBuildDir/Linux64/meas_algorithms-17.0.1/meas_algorithms-17.0.1/python/lsst/meas/algorithms/readTextCatalogTask.py:117: VisibleDeprecationWarning: Reading unicode strings without specifying the encoding argument is deprecated. Set the encoding, use None for the system default. names=names) tests/test_psfDetermination.py::SpatialModelPsfTestCase::testPsfDeterminerObjectSize /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfDetermination.py::SpatialModelPsfTestCase::testCandidateList /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_sdssShapePsf.py::SdssShapePsfTestCase::testMeasureGoodPsf /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfDetermination.py::SpatialModelPsfTestCase::testRejectBlends /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfDetermination.py::SpatialModelPsfTestCase::testPsfDeterminerNEigenObjectSizeStarSelector /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfDetermination.py::SpatialModelPsfTestCase::testPsfDeterminerSubimageObjectSizeStarSelector /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_detection.py::DetectionTestCase::testBasics /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_detection.py::DetectionTestCase::testTempBackgrounds /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_dynamicDetection.py::DynamicDetectionTest::testDynamic /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_dynamicDetection.py::DynamicDetectionTest::testNoSources /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_dynamicDetection.py::DynamicDetectionTest::testVanilla /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfSelectTest.py::PsfSelectionTestCase::testDistortedImage /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() tests/test_psfSelectTest.py::PsfSelectionTestCase::testPsfCandidate /usr/local/src/lsst_stack/stack/miniconda3-4.5.12-1172c30/Linux64/pipe_base/17.0.1/python/lsst/pipe/base/timer.py:90: DeprecationWarning: time.clock has been deprecated in Python 3.3 and will be removed from Python 3.8: use time.perf_counter or time.process_time instead cpuTime = time.clock() -- Docs: http://doc.pytest.org/en/latest/warnings.html ======== 263 passed, 6 skipped, 22 warnings, 13 error in 71.72 seconds =========